Image credit: DALL-E

Code

A collection of code that may be useful to others.

Camformers' submission to DREAM 2022

A convolutional neural network developed for the DREAM 2022 challenge "Predicting gene expression using millions of random promoter sequences" [code]. This submission took 4th place in the challenge.

Code related to previous projects/papers

• Retrieval and analysis of the piRNA cluster database [code] used in Bornelöv et al., 2022 [paper].
• Determination of genome of origin for allele-specific mapping [code].
• Analysis pipeline for RNA bisulfite sequencing data [code] used in Sajini et al., 2019 [paper] and Selmi et al., 2021 [paper].